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Signal Analysis using Matlab - A Heart Rate example

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A demonstration showing how matlab can be used to analyse a an ECG (heart signal) to determine the average beats per minute. Code available at http://dadorran.wordpress.com/2014/05/22/heartrate-bpm-example-matlab-code/
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Text Comments (121)
ari sunny (1 day ago)
Hi i have questions and i have project about this How can i be in touch with you?
kounkou vincent (3 months ago)
Hi Mr, I would like to calculate the heart rate of the audio sound get from a microphone with a sample rate of 48000, is that code can work with? need your help and thank you.
Harfena Faren (4 months ago)
hi, can you tell me the name of this ECG ecg sample you took from physionet?
mayur rao (1 year ago)
super thank you so much it helped me for my project
danish bebal (1 year ago)
I m not getting the value of k...will u plzz help me
gayan sanjeewa (1 year ago)
good job
gayan sanjeewa (1 year ago)
this verry nice
Evance Gyan Baidoo (1 year ago)
Hi Guys, Is it possible to to plot the prominent peaks as graph. My system keeps running out of space when i try. Any solution of code given will be much appreciated. Cheers
Max Mendez (1 year ago)
Hi man that was really heplful!! how can I set a threshold for the peaks?
Ipek Nurlu (1 year ago)
which data did you use as raw ecg data from physio.net?
Bushra Rashid (1 year ago)
Hey,i would appreciate if u help me in making my project.i want to make a device that senses our heart beat .first it calculates the normal heart beat when it comes in touch with human body(even if the person wore a thick layer of clothes underneath) then when the heart rate is decreasing it will give an alarm.if the hear rate increase within 2 secs then the alarm will stop,if not then the volume of alarm increases. If u make a video on it ,plz do let me know about its -Components -Expenses -And if any coding needed If u wanna know about it in a more detailed way,then plz email me
Ahmed Adan (1 year ago)
York U 1011 students please stand up
Matheus Pereira (2 years ago)
I got a signal .mat and I plotted that on matlab. I know to show de number of samples , but i don't know the sampling frequenci . did you know if is possible to know this with only de doc of de signal?
Solomon GIRMA (2 years ago)
Hello David do you have video on system identification?
Chika Okolo (2 years ago)
Excellent teacher
HANEN BENJOMAA (2 years ago)
can u help me getting it format.txt
fakhfakh issam (2 years ago)
i didnt understand what BPM is
No Radio (2 years ago)
you helped me a lot thnk u
Ronit Nath (2 years ago)
Respected Sir...How to obtain the sample values from physionet.org. I have searched the physionet.org database and the signals are stored in .dat form. Could u please help me out in retrieving the sampling points in the signals?? I need it urgently for my final year project.
guke su (3 years ago)
i did like you,but i got beat_count = 10 BPM = 120
moussaoui hayat (3 years ago)
Hi....I've a Matlab script about peaks detection , the problem that I can't understand how it works :( . can i show it to you ?
Ch Shaban (2 years ago)
@moussaoui hayat yes u can show
Bilisht Albania (3 years ago)
74% OFF coupon to Learn Matlab Udemy course Couponcode: ML25 https://www.udemy.com/learn-matlab/?couponCode=ML25
venu gopal (3 years ago)
also any imported files in code please
David Dorran (3 years ago)
+venu gopal I'm afraid I don't have the code saved anywhere. A link to the imported ecg signal is shown at the start of the video
d jh-10 (3 years ago)
xdat = 0:5:120; ydat = [62,57,56,55,57,56,58,62,62,63,61,61,62,62,62,61,60,60,60,61,65,68,67,66,67]; plot(xdat,ydat); nfft=length(ydat); nfft2=2.^nextpow2(nfft); ffty=fftshift(fft(ydat,nfft2)); r=abs(ffty); plot(r); plot(r); ↑ Error: The input character is not valid in MATLAB statements or expressions. can anyone tell me how/why im going wrong when trying to plot the FFT of this?
Khash Zarrin (3 years ago)
Great video! i have a query that i was hoping you would be able to help me with, for my final year project i have been researching into calculating distance using sound on an iphone 6. I have been playing short frequency sweeps on one iphone and recording the data on another phone sitting on top of the other. What i'm planning to do is calculate the delay between the initial sound and the reflected sound and combining that with the speed of sound to give me the distance between a wall and the iphone. however i'm struggling to do so. I know you are a wizard on MatLab and was wondering if there was any techniques or methods to approach in calculating that time delay within MatLab or Audacity.
Hafizatul Amirah (3 years ago)
do you know where i can get database .mat file for normal ecg signal?
Manzwei Chipungu (1 year ago)
Can you please specify the database because there is more of abnormal signals than normal.
Ramakrishna Desala (2 years ago)
physionet.org
Ramakrishna Desala (2 years ago)
physionet.org
kutlo kgaladua (3 years ago)
thank you so much sir. one question: is the fs always = 100Hz for this particular signal regardless of the length(duration of the signal taken from this site http://www.physionet.org/cgi-bin/atm/ATM ?
David Dorran (3 years ago)
+kutlo kgaladua ECG signals can be sampled at different rates. 100Hz and 128Hz appear to very common but higher sampling rates are also used. The sampling rate is is constant for each signal - it doesn't matter what the duration is the sampling rate remains the same.
Kwesi (3 years ago)
Please How do i use the loop function to get the change in Torque signal at angles 5°, 10° ,15° & 20° from an ankel dynamometer
Dindar Dosky (3 years ago)
Thank you very for this valuable video, really I good much information from it.
ibrahim Al-Taie (3 years ago)
Sir @David Dorran this signal is noise free isn't it?
r rahimi (4 years ago)
how can I store the picks in a function in order to get R to R distance of ecg signal?.Its possible to calculate the HR from R-R diffrence.thank you very much
Olivia McCormick (4 years ago)
Hi, great video but is the findpeaks function a good way to be able to find the peaks of the P and T wave? Obviously, I need to exclude the R wave but I have been playing around with the findpeaks command and just can't seem to figure it out. Any suggestions?
Marcin Wojciechowski (4 years ago)
(y)
Nikhil Goregaonkar (4 years ago)
Hey do u have PPG waveform as u had the ECG waveform and its values in txt format.?? I am working on the same thing but using PPG waveform..can u help me getting it..thank you
Binu Janardhanan (3 years ago)
@Nikhil Goregaonkar http://www.physionet.org/cgi-bin/atm/ATM
Sudath Piyasena (4 years ago)
thank you very much
parijatprakash (4 years ago)
Can this same code work on an EEG signal too ?
toncanan (4 years ago)
I was wondering as to how you got the integer values for your ecg.txt
Jawad Ghafoor (1 year ago)
You can use different sensors to get digital values, like 'Ad8232' is a very good ECG sensor.
David Dorran (4 years ago)
I downloaded the signal from physionet.org
toncanan (4 years ago)
are all or most peaks of the heart beat always greater than 1...?
toncanan (4 years ago)
+David Dorran
toncanan (4 years ago)
is this method of calculation using rr interval?
David Dorran (4 years ago)
@Anthonette Cantara you could try finding the maximum of the signal and compare against 0.8*max_val, for example. This wouldn't work if there was DC drift though but you could filter this effect out using a high pass filter or maybe just update the max_val every few cycles. 
toncanan (4 years ago)
@David Dorran is there a possibe formula to determine that? since during the detection of dominant peaks, you compared 1 with every signal..
David Dorran (4 years ago)
only in this example. The amplitude values are dependent upon how the signal was initially captured and can vary significantly. Also, in practice there are other issues such as DC drift that can occur and do cause additional problems.
Electro (4 years ago)
Great video. However it is "prominent", not "prominant". Also, ideally the average heart rate should be a running average, taken from the first two prominent peaks. That way two values are given, an instantaneous BPM and a running average BPM. For a critical care patient 1-minute makes the difference between life and death.
MrArammos (4 years ago)
How can i convert and .dat file to run it on Matlab??
David Dorran (4 years ago)
.dat files are not standardised and could relate to lots of different formats. See if you can open the file with a text editor to see how the data is structured. This might not be possible though. If the data is stored as a sequence of numerical values you load in the data using the load command. data = load('filename.dat');
Hi David. The code looks good. This will be very helful for my analyses. I appreciate your fast respone. Thank you very much!
Hi David. I would like to know how to store all instant of times whre the prominent peaks happened. Could you explain me how to do that. Thanks for your video.
David Dorran (4 years ago)
I've modified some code I posted before to include a new vector called peak_times which is updated every time a prominent peak is found. This should do the job. fs = 100; beat_count = 0; peak_indicator = ones(1, length(sig))*NaN; for k = 2 : length(sig)-1     if(sig(k) > sig(k-1) & sig(k) > sig(k+1) & sig(k) > 1)         %k         peak_indicator(k) = sig(k);         %disp('Prominant peak found');         beat_count = beat_count + 1;         peak_times(beat_count) = k/fs;     end end plot(sig); hold on plot(peak_indicator,'ro');
Canjie Yang (4 years ago)
thanks for sharing
Blake Martin (4 years ago)
This is a great tutorial. I really like the way you show how errors happen and how to fix them. I also like your very clear coding language.  My one suggestion is that MatLab is quite slow in doing loops, so it is better to use logical indexing.  The code remains almost identical, but rather than an 'if' loop, I just make a variable called 'beat_grab' that grabs all of the counted beats at one time: %% count dominant peaks beat_grab = sig(k)>sig(k-1) & sig(k)>sig(k+1) & sig(k) >1; beat_count = length(beat_grab); Then continue with code to divide the beats Original code runs in about  0.001754 seconds. Altered code runs in about 0.000208 seconds, ten times faster. This may not matter depending on your sampling rate and the length of your data, but MatLab programmers generally try to be as efficient as possible, and loops are low on effeciency. Still I learned some new things too! Thanks.
David Dorran (4 years ago)
I tend to avoid loops myself but I use this tutorials to teach programming as well and not all programming languages work in the same way as matlab - but they do all have loops! Thanks for your comments!
Zain Abbas (5 years ago)
I really like your videos, I am working on feature extraction of EEG signals...If possible can you do some signal processing such as Analog to digital conversion of EEG signals or some form EEG feature extraction using wavelet transform or autoregressive moving average method or some other. Actually i have difficulty modelling the parameters. 
Zain Abbas (5 years ago)
Okay thankyou david. I will check on aliasing and quantisation issues. And looking forward to ARMA example video
David Dorran (5 years ago)
For analog to digital conversion all I have are videos on aliasing and quantisation issues. I don't have any expertise with EEG signal modelling but intend to do some videos of ARMA based modelling for speech when I get a chance. Best of luck.
Ketaki Patil (5 years ago)
dear david sir, Can I get help in calculating PR interval? 
Ketaki Patil (5 years ago)
Dear David Sir, Found it very helpful. Thank you so much
Anil Pandey (5 years ago)
I liked this video. What if we just want the prominent peaks to be plotted/marked. What kind of modification in the code would be necessary in such a condition?
David Dorran (5 years ago)
The following should work by highlighting prominent peaks with red circles. beat_count = 0; peak_indicator = ones(1, length(sig))*NaN; for k = 2 : length(sig)-1     if(sig(k) > sig(k-1) & sig(k) > sig(k+1) & sig(k) > 1)         %k         peak_indicator(k) = sig(k);         %disp('Prominant peak found');         beat_count = beat_count + 1;     end end plot(sig); hold on plot(peak_indicator,'ro');
Tommaso Rossi (5 years ago)
hi david! i am working on datas that i' ve taken from physionet.org, that are ina a .dat extension. i can't load them on matlab, because they contain also notASCII-symbols. what can i do?? 
David Dorran (5 years ago)
Check out http://physionet.org/tutorials/physiobank-text.shtml. This should be of help.
mimi shaharum (5 years ago)
hi david.. glad to find your channel.. can u do a tutorial on various features that can be extracted in signal processing such as mfcc etc. thnks!
mimi shaharum (5 years ago)
@David Dorran  very nice of sure.. sure.. illw wait. :)
David Dorran (5 years ago)
I'll put them on the "to do" list mimi - won't be any time soon though. The list is quite long.
Kelly Sheerin (5 years ago)
Hi David, Thanks a lot for posting this, it has been very useful for someone new to Matlab. I've adapted the code you've presented to help analyse my acceleration data. However, what I'm really after are the magnitudes of the peaks, which in your example would correspond to the magnitudes of your 'R' wave. Do you have anything that would be helpful for me in this regard? Thanks!
Kelly Sheerin (5 years ago)
@David Dorran That was exactly what I was after... Thanks!
David Dorran (5 years ago)
Do you just want to display the magnitude values associated with each peak? If so its just a case of replacing "beat_count = beat_count + 1" with "abs(sig(k))". Not sure if I understood the question fully.
lobo del bosque (5 years ago)
porque diablos no hablan en español!!!!!. 
David Dorran (5 years ago)
porque diablos no habla irlandesa :)
lobo del bosque (5 years ago)
" NIl a fhion agam",... No te entiendo compadre, hablame en cristiano xd
David Dorran (5 years ago)
Níl a fhios agam!!!!
Robo Sumo (5 years ago)
Níl a fhios agam!!!!
Albert GUIMFACK (5 years ago)
Thanks you very much for this video. Very attractive.
Tobchi2010 (5 years ago)
Very nice video. I give you an up thumb
Man Yeap Hooi (5 years ago)
Dear David, Really is a nice video and I learn a lot from here. Thanks a lot. But I'm just curious can be the frequency sampling rate be changed? Or it must be fixed at 100Hz? Best Regards, Hooi Man Yeap
Man Yeap Hooi (5 years ago)
@David Dorran Okay, get it... Thanks for your information. :D 
David Dorran (5 years ago)
The ecg data was originally captured at this rate (100Hz). It could have been captured at a different rate.
Saya Jujur (5 years ago)
Dear David, I am wali, i am a PhD student in Malaysia. Thank you for this video. It is great to start ECG signal processing. I wonder , if you could share  the codes in txt format ?! I want to modify it to R peak detection algorithm. My signals is corrupted. so before R peak detection, i want to add at least 3 filters. This will be based on your code. Kindly, Wali
Saya Jujur (5 years ago)
thank you sir
David Dorran (5 years ago)
I'm afraid I don't have that code any more but you should be able to get it from the video. 
dersstri (5 years ago)
Nice video. Any references you used for making this video would be appreciated
mohammed baeesa (5 years ago)
hii sir , i love ur vid, it's really great :) .. but how about if i have a real time data can be done with ur method ? [email protected] ..
David Dorran (5 years ago)
noise = randn(1, 10000); %10000 samples of broadband random noise fs = 500; Fnyq = fs/2 [b a] = butter(5, [45/Fnyq 55/Fnyq], 'bandpass'); noise_band_50Hz = filter(b,a, noise);
maria Islam (3 months ago)
sir i have wrote the same code but I'm getting beat_count=10
Alisa H (5 years ago)
I'd like to know, how to create noise, which can remind for example: pacient's moving, not correctly plugged electrodes etc. ... any ideas? Thx a lot.
Jesal Shah (5 years ago)
thank you ..! this tutorial has been very helpful..!! though i wanted to know if you can segregate the qrs complex from any of the ecg waves using matlab..?? m and yes any ecg wave means it can also be from the subject having heart rate disorders.
jojan joseph (5 years ago)
Thanks a lot for this video. I understood very well. Could you help me with ECG signal noise filtering using matlab.
Alisa H (5 years ago)
Hey man, fuckin´ great! I love your channel. My bachelor thesis is about signal analysis (ICA over ECG).
Anuj Khandelwal (5 years ago)
Thanks David, "Frequency Domain 1.3 - Demonstration - Application of frequency domain view" was really helpful to understand the concept. Yes, I have frequency-domain and time-domain signal data and I have to perform feature extraction. I am still trying to figure out the code apply to my dataset.
David Dorran (5 years ago)
Nothing on general feature extraction yet but "Matlab Signal Analysis - frame by frame analysis of a signal" might be of help if you are starting out. Also there's one called "Frequency Domain 1.3 - Demonstration - Application of frequency domain view " that shows how to extract frequency domain info that might be useful.
Anuj Khandelwal (5 years ago)
any help with "FEATURE EXTRACTION" ?
coddy57 (5 years ago)
Perfect! It works fine. That's what I'm talking bout. Thanks a lot you Mr. Dorran :)
David Dorran (5 years ago)
That didn't format as intended. You'll probably have to put a newline after "while 1"
David Dorran (5 years ago)
Its easy enough. Here's some code that plots the signal from a sound card in real time (with thanks to my colleague Richard Hayes!). Fs=11025; N=2048;t=(0:N-1)/Fs; while 1 y = wavrecord(N,Fs,2); plot(y); axis( [0 N -1 1]); drawnow; end
coddy57 (5 years ago)
Hi,I designed a circuit with a stethoscope, the output of my circuit goes to the sound card of my PC, the matter is: is it possible to get that output signal (heartbeats) from stethoscope in real time using MATLAB? Is it difficult? I really appreciate your answer. Thank you!
krishna neupane (5 years ago)
can you also provide me a some documents of your project, i'm also doing project on physionet MIT-BIH arrhythmia database
krishna neupane (5 years ago)
sir please provide how to plot the HRV signals and how to bandpass the ECG signal using 50Hz bandwidth and also for MIT-BIH arrythmia database
Usman Hari (5 years ago)
very very nice explanation
moe fo sho (6 years ago)
"findpeaks" is a bit easier :-P ....
mistbabe26 (6 years ago)
Your amazing! Thank you, Continue to do the great work. You helped me a lot for my term project.
Vahid Khorasani (6 years ago)
Thanks a million!! that was wonderful!
Claudia NL (6 years ago)
Thanks, very useful. I'm new in Matlab and this video is helping me a lot, I need to create a tachogram based on the ECG data,, I think I can do that, since with your code the prominant peak values have been obtained
Nélio Neves (6 years ago)
Good one. Thank you!
migly0105 (6 years ago)
How can I store the i values that contain peaks?
Spaceman Spiff (6 years ago)
Just what I was looking for. Thanks! I'm going to buy MatLab now. You should get a cut!
MCHANDRA G (6 years ago)
very needy !!
Shuang Zhao (6 years ago)
Very helpful! Thanks a lot!
David Dorran (6 years ago)
I have a video on reading an ECG signal (search reading ECG signal on my channel - links not allowed I'm afraid). From 2:30 to 6:00 is most relevant to this issue.
deit1813 (6 years ago)
Hi, if l want to store the values of k in an array how should i write? thanks
David Dorran (6 years ago)
you can download it from the web. Can't provide url's here but check out the firs 30 seconds or so of the video
enng ennng (6 years ago)
Hi! It is very good, I will give you 5 stars. Do you have data for PPG signal if so please send.
Mustafa Hashim (7 years ago)
it's really was very useful tutorial

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